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1

Protein based microarrays: A tool for probing the proteome of cancer cells and tissues

Juan Madoz-Gúrpide, Hong Wang, David E. Misek, Franck Brichory, Sam M. Hanash

Journal:

Year:

2001

Language:

english

File:

PDF, 177 KB

english, 2001

2

Characterization of apolipoprotein and apolipoprotein precursors in pancreatic cancer serum samples via two-dimensional liquid chromatography and mass spectrometry

Jianzhong Chen, Michelle Anderson, David E. Misek, Diane M. Simeone, David M. Lubman

Journal:

Journal of Chromatography A

Year:

2007

Language:

english

File:

PDF, 482 KB

english, 2007

3

Gene-expression profiles predict survival of patients with lung adenocarcinoma

Beer, David G., Kardia, Sharon L.R., Huang, Chiang-Ching, Giordano, Thomas J., Levin, Albert M., Misek, David E., Lin, Lin, Chen, Guoan, Gharib, Tarek G., Thomas, Dafydd G., Lizyness, Michelle L., Kui

Journal:

Nature Medicine

Year:

2002

Language:

english

File:

PDF, 882 KB

english, 2002

4

Identification of proteins from two-dimensional gel electrophoresis of human erythroleukemia cells using capillary high performance liquid chromatography/electrospray-ion trap-reflectron time-of-flight mass spectrometry with two-dimensional topographic map analysis of in-gel tryptic digest products

Yajuan Chen, Xiaoying Jin, David Misek, Robert Hinderer, Sam M. Hanash, David M. Lubman

Journal:

Rapid Communications in Mass Spectrometry

Year:

1999

Language:

english

File:

PDF, 268 KB

english, 1999

5

Capillary electrophoresis/tandem mass spectrometry for analysis of proteins from two-dimensional sodium dodecyl sulfate polyacrylamide gel electrophoresis

Xiaoying Jin, Yajuan Chen, David M. Lubman, David Misek, Samir M. Hanash

Journal:

Rapid Communications in Mass Spectrometry

Year:

1999

Language:

english

File:

PDF, 102 KB

english, 1999

6

A Straightforward Route to Helically Chiral N-Heteroaromatic Compounds: Practical Synthesis of Racemic 1,14-Diaza[5]helicene and Optically Pure 1- and 2-Aza[6]helicenes

Jiří Míšek, Filip Teplý, Irena G. Stará, Miloš Tichý, David Šaman, Ivana Císařová, Pavel Vojtíšek, Ivo Starý

Journal:

Angewandte Chemie

Year:

2008

Language:

english

File:

PDF, 431 KB

english, 2008

7

A Straightforward Route to Helically Chiral N-Heteroaromatic Compounds: Practical Synthesis of Racemic 1,14-Diaza[5]helicene and Optically Pure 1- and 2-Aza[6]helicenes

Jiří Míšek, Filip Teplý, Irena G. Stará, Miloš Tichý, David Šaman, Ivana Císařová, Pavel Vojtíšek, Ivo Starý

Journal:

Angewandte Chemie International Edition

Year:

2008

Language:

english

File:

PDF, 432 KB

english, 2008

8

Heart development in the spotted dolphin (Stenella attenuata)

David Sedmera, Ivan Misek, Milan Klima, Robert P. Thompson

Journal:

The Anatomical Record Advances in Integrative Anatomy and Evolutionary Biology

Year:

2003

Language:

english

File:

PDF, 1.86 MB

english, 2003

9

Comparative proteomic study of two closely related ovarian endometrioid adenocarcinoma cell lines using cIEF fractionation and pathway analysis

Lan Dai, Chen Li, Kerby A. Shedden, David E. Misek, David M. Lubman

Journal:

ELECTROPHORESIS

Year:

2009

Language:

english

File:

PDF, 454 KB

english, 2009

10

Hepatitis C virus NS5A-regulated gene expression and signaling revealed via microarray and comparative promoter analyses

Sophie Girard, Erik Vossman, David E. Misek, Philippe Podevin, Samir Hanash, Christian Bréchot, Laura Beretta

Journal:

Year:

2004

Language:

english

File:

PDF, 423 KB

english, 2004

11

Reduced selenium-binding protein 1 expression is associated with poor outcome in lung adenocarcinomas

Guoan Chen, Hong Wang, Charles T Miller, Dafydd G Thomas, Tarek G Gharib, David E Misek, Thomas J Giordano, Mark B Orringer, Samir M Hanash, David G Beer

Journal:

The Journal of Pathology

Year:

2004

Language:

english

File:

PDF, 396 KB

english, 2004

12

Molecular profiling of the immune response in colon cancer using protein microarrays: Occurrence of autoantibodies to ubiquitin C-terminal hydrolase L3

Myeong J. Nam, Juan Madoz-Gurpide, Hong Wang, Pascal Lescure, Cecelia E. Schmalbach, Rong Zhao, David E. Misek, Rork Kuick, Dean E. Brenner, Samir M. Hanash

Journal:

Year:

2003

Language:

english

File:

PDF, 208 KB

english, 2003

13

Microarrays of tumor cell derived proteins uncover a distinct pattern of prostate cancer serum immunoreactivity

Kerri Bouwman, Ji Qiu, Heping Zhou, Mark Schotanus, Leslie A. Mangold, Robert Vogt, Erik Erlandson, John Trenkle, Alan W. Partin, David Misek, Gilbert S. Omenn, Brian B. Haab, Samir Hanash

Journal:

Year:

2003

Language:

english

File:

PDF, 313 KB

english, 2003

14

Proteomic analysis of eIF-5A in lung adenocarcinomas

Guoan Chen, Tarek G. Gharib, Dafydd G. Thomas, Chiang-Ching Huang, David E. Misek, Rork D. Kuick, Thomas J. Giordano, Mark D. Iannettoni, Mark B. Orringer, Samir M. Hanash, David G. Beer

Journal:

Year:

2003

Language:

english

File:

PDF, 312 KB

english, 2003

15

A wide range of protein isoforms in serum and plasma uncovered by a quantitative intact protein analysis system

David E. Misek, Rork Kuick, Hong Wang, Vladimir Galchev, Bin Deng, Rong Zhao, John Tra, Michael R. Pisano, Ravi Amunugama, David Allen, Angela K. Walker, John R. Strahler, Philip Andrews, Gilbert S. O

Journal:

Year:

2005

Language:

english

File:

PDF, 200 KB

english, 2005

16

An experimental strategy for quantitative analysis of the humoral immune response to prostate cancer antigens using natural protein microarrays

Sara Forrester, Ji Qiu, Leslie Mangold, Alan Partin, David Misek, Brett Phinney, Douglas Whitten, Philip Andrews, Eleftherios Diamandis, Gilbert S. Omenn, Samir Hanash, Brian B. Haab

Journal:

PROTEOMICS - Clinical Applications

Year:

2007

Language:

english

File:

PDF, 760 KB

english, 2007

17

Comparative proteomic analysis of low stage and high stage endometrioid ovarian adenocarcinomas

Hyeyeung Kim, Rong Wu, Kathleen R. Cho, Dafydd G. Thomas, Gabrielle Gossner, J. Rebecca Liu, Thomas J. Giordano, Kerby A. Shedden, David E. Misek, David M. Lubman

Journal:

PROTEOMICS - Clinical Applications

Year:

2008

Language:

english

File:

PDF, 841 KB

english, 2008

18

Gene expression–based survival prediction in lung adenocarcinoma: a multi-site, blinded validation study

Shedden, Kerby, Taylor, Jeremy M G, Enkemann, Steven A, Tsao, Ming-Sound, Yeatman, Timothy J, Gerald, William L, Eschrich, Steven, Jurisica, Igor, Giordano, Thomas J, Misek, David E

Journal:

Nature Medicine

Year:

2008

Language:

english

File:

PDF, 211 KB

english, 2008

19

Increased C-CRK proto-oncogene expression is associated with an aggressive phenotype in lung adenocarcinomas

Miller, Charles T, Chen, Guoan, Gharib, Tarek G, Wang, Hong, Thomas, Dafydd G, Misek, David E, Giordano, Thomas J, Yee, John, Orringer, Mark B, Hanash, Samir M

Journal:

Year:

2003

Language:

english

File:

PDF, 360 KB

english, 2003

20

Molecular classification of papillary thyroid carcinoma: distinct BRAF, RAS, and RET/PTC mutation-specific gene expression profiles discovered by DNA microarray analysis

Misek, David E, Vinco, Michelle, Sanders, Donita, Zhu, Zhaowen, Ciampi, Raffaele, Roh, Michael, Shedden, Kerby, Giordano, Thomas J, Kuick, Rork, Thomas, Dafydd G

Journal:

Year:

2005

Language:

english

File:

PDF, 350 KB

english, 2005

21

An Altered Cellular Response to Interferon and Up-Regulation of Interleukin-8 Induced by the Hepatitis C Viral Protein NS5A Uncovered by Microarray Analysis

Sophie Girard, Philip Shalhoub, Pascal Lescure, Abdelmajid Sabile, David E. Misek, Samir Hanash, Christian Bréchot, Laura Beretta

Journal:

Year:

2002

Language:

english

File:

PDF, 248 KB

english, 2002

22

Mouse Model of Human Ovarian Endometrioid Adenocarcinoma Based on Somatic Defects in the Wnt/β-Catenin and PI3K/Pten Signaling Pathways

Rong Wu, Neali Hendrix-Lucas, Rork Kuick, Yali Zhai, Donald R. Schwartz, Aytekin Akyol, Samir Hanash, David E. Misek, Hidetaka Katabuchi, Bart O. Williams, Eric R. Fearon, Kathleen R. Cho

Journal:

Year:

2007

Language:

english

File:

PDF, 1.46 MB

english, 2007

23

Transforming properties of a Q18→E mutation of the microtubule regulator Op18

David E Misek, Christina L Chang, Rork Kuick, Robert Hinderer, Thomas J Giordano, David G Beer, Samir M Hanash

Journal:

Year:

2002

Language:

english

File:

PDF, 963 KB

english, 2002

24

Distinctive serum protein profiles involving abundant proteins in lung cancer patients based upon antibody microarray analysis

Wei-Min Gao, Rork Kuick, Randal P Orchekowski, David E Misek, Ji Qiu, Alissa K Greenberg, William N Rom, Dean E Brenner, Gilbert S Omenn, Brian B Haab, Samir M Hanash

Journal:

Year:

2005

Language:

english

File:

PDF, 690 KB

english, 2005

25

Genomic and Proteomic Analyses of Vascular Endothelial Growth Factor and Insulin-Like Growth Factor–Binding Protein 3 in Lung Adenocarcinomas

Tarek G. Gharib, Guoan Chen, Chiang-Ching Huang, David E. Misek, Mark D. Iannettoni, Samir M. Hanash, Mark B. Orringer, David G. Beer

Journal:

Clinical Lung Cancer

Year:

2004

Language:

english

File:

PDF, 372 KB

english, 2004

26

Discovery of cancer biomarkers through the use of mouse models

Rork Kuick, David E. Misek, David J. Monsma, Craig P. Webb, Hong Wang, Kelli J. Peterson, Michael Pisano, Gilbert S. Omenn, Samir M. Hanash

Journal:

Year:

2007

Language:

english

File:

PDF, 324 KB

english, 2007

27

Candidate downstream regulated genes of HOX group 13 transcription factors with and without monomeric DNA binding capability

Thomas M. Williams, Melissa E. Williams, Rork Kuick, David Misek, Kevin McDonagh, Samir Hanash, Jeffrey W. Innis

Journal:

Developmental Biology

Year:

2005

Language:

english

File:

PDF, 727 KB

english, 2005

28

Organ-Specific Molecular Classification of Primary Lung, Colon, and Ovarian Adenocarcinomas Using Gene Expression Profiles

Thomas J. Giordano, Kerby A. Shedden, Donald R. Schwartz, Rork Kuick, Jeremy M.G. Taylor, Nana Lee, David E. Misek, Joel K. Greenson, Sharon L.R. Kardia, David G. Beer, Gad Rennert, Kathleen R. Cho, S

Journal:

The American Journal of Pathology

Year:

2001

Language:

english

File:

PDF, 1.12 MB

english, 2001

29

Characterization of Gene Expression Profiles Associated with Glioma Progression Using Oligonucleotide-Based Microarray Analysis and Real-Time Reverse Transcription-Polymerase Chain Reaction

Jörg van den Boom, Marietta Wolter, Rork Kuick, David E. Misek, Andrew S. Youkilis, Daniel S. Wechsler, Clemens Sommer, Guido Reifenberger, Samir M. Hanash

Journal:

The American Journal of Pathology

Year:

2003

Language:

english

File:

PDF, 893 KB

english, 2003

30

Accurate Molecular Classification of Human Cancers Based on Gene Expression Using a Simple Classifier with a Pathological Tree-Based Framework

Kerby A. Shedden, Jeremy M.G. Taylor, Thomas J. Giordano, Rork Kuick, David E. Misek, Gad Rennert, Donald R. Schwartz, Stephen B. Gruber, Craig Logsdon, Diane Simeone, Sharon L.R. Kardia, Joel K. Gree

Journal:

The American Journal of Pathology

Year:

2003

Language:

english

File:

PDF, 162 KB

english, 2003

31

Distinct Transcriptional Profiles of Adrenocortical Tumors Uncovered by DNA Microarray Analysis

Thomas J. Giordano, Dafydd G. Thomas, Rork Kuick, Michelle Lizyness, David E. Misek, Angela L. Smith, Donita Sanders, Rima T. Aljundi, Paul G. Gauger, Norman W. Thompson, Jeremy M.G. Taylor, Samir M.

Journal:

The American Journal of Pathology

Year:

2003

Language:

english

File:

PDF, 1.42 MB

english, 2003

32

Intracellular Sorting of Plasma Membrane Glycoproteins in Epithelial Cells

PEDRO J. I. SALAS, DORA E. VEGA de SALAS, DAVID MISEK, ENZO BARD, ENRIQUE J. RODRIGUEZ-BOULAN

Journal:

Annals of the New York Academy of Sciences

Year:

1984

Language:

english

File:

PDF, 825 KB

english, 1984

33

Isoelectric Focusing Nonporous RP HPLC: A Two-Dimensional Liquid-Phase Separation Method for Mapping of Cellular Proteins with Identification Using MALDI-TOF Mass Spectrometry

Wall, Daniel B., Kachman, Maureen T., Gong, Siyuan, Hinderer, Robert, Parus, Steven, Misek, David E., Hanash, Samir M., Lubman, David M.

Journal:

Analytical Chemistry

Year:

2000

Language:

english

File:

PDF, 508 KB

english, 2000

34

Profiling of pathway-specific changes in gene expression following growth of human cancer cell lines transplanted into mice

Chad Creighton, Rork Kuick, David E Misek, David S Rickman…

Journal:

Year:

2003

Language:

english

File:

PDF, 237 KB

english, 2003

35

Plasma Glycoprotein Profiling for Colorectal Cancer Biomarker Identification by Lectin Glycoarray and Lectin Blot

Qiu, Yinghua, Patwa, Tasneem H., Xu, Li, Shedden, Kerby, Misek, David E., Tuck, Missy, Jin, Gracie, Ruffin, Mack T., Turgeon, Danielle K., Synal, Sapna, Bresalier, Robert, Marcon, Norman, Brenner, Dea

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 2.03 MB

english, 2008

36

Identification of pancreatic genes expressed during the initiation of acute pancreatitis: EGR-1 is a key regulator

Logsdon, Craig D., Ji, Baoan, Chen, Xue-Qing, Misek, David E., Kuick, Rork, Ernst, Steve, Rebecca, Najarian, Hanash, Samir

Journal:

Gastroenterology

Year:

2003

Language:

english

File:

PDF, 244 KB

english, 2003

37

Biogenesis of epithelial cell polarity: Intracellular sorting and vectorial exocytosis of an apical plasma membrane glycoprotein

Misek, David E., Bard, Enzo, Rodriguez-Boulan, Enrique

Journal:

Year:

1984

Language:

english

File:

PDF, 3.51 MB

english, 1984

38

Proteomic Analysis of Cytokeratin Isoforms Uncovers Association with Survival in Lung Adenocarcinoma

Gharib, Tarek G., Chen, Guoan, Wang, Hong, Huang, Chiang-Ching, Prescott, Michael S., Shedden, Kerby, Misek, David E., Thomas, Dafydd G., Giordano, Thomas J., Taylor, Jeremy M.G., Kardiat, Sharon, Yee

Journal:

Year:

2002

Language:

english

File:

PDF, 188 KB

english, 2002

39

Microtubules and Actin Filaments Are Not Critically Involved in the Biogenesis of Epithelial Cell Surface Polarity

Pedro J. I. Salas, David E. Misek, Dora E. Vega-Salas, Doris Gundersen, Marcelino Cereijido and Enrique Rodriguez-Boulan

Journal:

The Journal of Cell Biology

Year:

1986

Language:

english

File:

PDF, 5.64 MB

english, 1986

40

Glycoprotein Microarrays with Multi-Lectin Detection: Unique Lectin Binding Patterns as a Tool for Classifying Normal, Chronic Pancreatitis and Pancreatic Cancer Sera

Zhao, Jia, Patwa, Tasneem H., Qiu, Weilian, Shedden, Kerby, Hinderer, Robert, Misek, David E., Anderson, Michelle A., Simeone, Diane M., Lubman, David M.

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 632 KB

english, 2007

41

Differential Protein Mapping of Ovarian Serous Adenocarcinomas: Identification of Potential Markers for Distinct Tumor Stage

Wang, Yanfei, Wu, Rong, Cho, Kathleen R., Thomas, Dafydd G., Gossner, Gabrielle, Liu, J. Rebecca, Giordano, Thomas J., Shedden, Kerby A., Misek, David E., Lubman, David M.

Journal:

Journal of Proteome Research

Year:

2009

Language:

english

File:

PDF, 12.34 MB

english, 2009

42

Development of Natural Protein Microarrays for Diagnosing Cancer Based on an Antibody Response to Tumor Antigens

Qiu, Ji, Madoz-Gurpide, Juan, Misek, David E., Kuick, Rork, Brenner, Dean E., Michailidis, George, Haab, Brian B., Omenn, Gilbert S., Hanash, Sam

Journal:

Journal of Proteome Research

Year:

2004

Language:

english

File:

PDF, 221 KB

english, 2004

43

Application of proteomic technologies to tumor analysis

Misek, David E, Imafuku, Yugi, Hanash, Samir M

Journal:

Pharmacogenomics

Year:

2004

Language:

english

File:

PDF, 582 KB

english, 2004

44

Molecular Profiling and the Identification of Genes Associated With Metastatic Oral Cavity/Pharynx Squamous Cell Carcinoma

Schmalbach, Cecelia E., Chepeha, Douglas B., Giordano, Thomas J., Rubin, Mark A., Teknos, Theodoros N., Bradford, Carol R., Wolf, Gregory T., Kuick, Rork, Misek, David E., Trask, Douglas K., Hanash, S

Journal:

Archives of Otolaryngology - Head and Neck Surgery

Year:

2004

Language:

english

File:

PDF, 151 KB

english, 2004

45

ATDC (Ataxia Telangiectasia Group D Complementing) Promotes Radioresistance through an Interaction with the RNF8 Ubiquitin Ligase

Yang, Huibin, Palmbos, Phillip L., Wang, Lidong, Kim, Evelyn H., Ney, Gina M., Liu, Chao, Prasad, Jayendra, Misek, David E., Yu, Xiaochun, Ljungman, Mats, Simeone, Diane M.

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 4.64 MB

english, 2015

46

Pancreatic gene expression during the initiation of acute pancreatitis: identification of EGR-1 as a key regulator

Ji, Baoan, Chen, Xue-qing, Misek, David E., Kuick, Rork, Hanash, Samir, Ernst, Steve, Najarian, Rebecca, Logsdon, Craig D.

Journal:

Physiological Genomics

Year:

2003

Language:

english

File:

PDF, 1.43 MB

english, 2003

47

Long-term Ethanol Consumption Alters Pancreatic Gene Expression in Rats

Kubisch, Constanze H., Gukovsky, Ilya, Lugea, Aurelia, Pandol, Stephen J., Kuick, Rork, Misek, David E., Hanash, Samir M., Logsdon, Craig D.

Journal:

Year:

2006

Language:

english

File:

PDF, 1.49 MB

english, 2006

48

Early Detection and Biomarkers in Pancreatic Cancer

Misek, David E., Patwa, Tasneem H., Lubman, David M., Simeone, Diane M.

Journal:

Journal of the National Comprehensive Cancer Network

Year:

2007

Language:

english

File:

PDF, 357 KB

english, 2007

49

Proteomics-Based Disease Biomarkers

Misek, David E., Kondo, Tadashi, Duncan, Mark W.

Journal:

International Journal of Proteomics

Year:

2011

Language:

english

File:

PDF, 1.02 MB

english, 2011

50

Glycoproteomics-Based Identification of Cancer Biomarkers

Kim, Evelyn H., Misek, David E.

Journal:

International Journal of Proteomics

Year:

2011

Language:

english

File:

PDF, 1.22 MB

english, 2011

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